Should I pay with my personal Apple ID account?
Unfortunately, Apple does not yet allow you to have both a company and personal credit card associated with your Apple ID account.
We recommend purchasing a subscription from the web interface using a company credit card instead of purchasing using your personal Apple ID account.
Just sign in then click “Pricing / Licensing” in the left hand main menu.

If you are already paying using your Apple ID and want to use a company credit card, please follow this tutorial.